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["Pereira et al, 2019. Genome sequencing of Mycobacterium pinnipedii strains: genetic characterization and evidence of superinfection in a South American sea lion (Otaria flavescens)"]
["Table S1. Single nucleotide polymorphisms (SNPs) and indels that differentiate Mycobacterium pinnipedii strains MP1 and MP2. "]
[]
["Samples","Contig","Pos","Ref","Var","Score","Var_cov","Var_frac","Type","Ref_nt","Var_nt","Ref_aa","Var_aa","Frameshift","Gene_ID","Function","COGs","Upstream_feature","Downstream_feature"]
["MP1xMP2","194542.41.con.0104",66487,"GA","TG","227.27","2.0","0.29","Nonsyn","ctc","cCA","L","P",null,"fig|194542.41.peg.3258","[Protein-PII] uridylyltransferase (EC 2.7.7.59) / [Protein-PII]-UMP uridylyl-removing enzyme","E","DNA or RNA helicase of superfamily protein II","Nitrogen regulatory protein P-II"]
["MP1xMP2","194542.41.con.0050",136,"AGCT","AT",{"v":407252,"d":"407,252"},"4.0","0.67","Deletion","gagctt","gATt","EL","D","yes","fig|194542.41.peg.1784","13E12 repeat family protein","S",null,"Biotin synthase (EC 2.8.1.6)"]
["MP1xMP2","194542.41.con.0012",1022,"TGGGGGA","GGGGGGA",{"v":933631,"d":"933,631"},"2.0","0.29","Nonsyn","tcccccacg","TCCCCCCcg","SPT","SPP",null,"fig|194542.41.peg.626","3-oxoacyl-[acyl-carrier-protein] synthase, KASIII (EC 2.3.1.180)","I","PE_PGRS family protein ","1,4-dihydroxy-2-naphthoate polyprenyltransferase (EC 2.5.1.74)"]
["MP1xMP2","194542.41.con.0054",16850,"ACC","AA",{"v":403703,"d":"403,703"},"2.0","0.22","Deletion","cgggtg","cgTTg","RV","R","yes","fig|194542.41.peg.2006","4-alpha-glucanotransferase (amylomaltase) (EC 2.4.1.25)","Q","hypothetical protein","4-alpha-glucanotransferase (amylomaltase) (EC 2.4.1.25)"]
["MP1xMP2","194542.41.con.0012",2618,"TG","GC",{"v":496865,"d":"496,865"},"3.0","0.38","Nonsyn","ttg","tGC","L","C",null,"fig|194542.41.peg.628","5'-methylthioadenosine phosphorylase (EC 2.4.2.28)","E","1,4-dihydroxy-2-naphthoate polyprenyltransferase (EC 2.5.1.74)","UDP-glucose 4-epimerase (EC 5.1.3.2)"]
["MP1xMP2","194542.41.con.0051",39709,"CGGTG","GGGTG",{"v":828358,"d":"828,358"},"2.0","0.25","Nonsyn","cggtgc","GGGTGc","RC","GC",null,"fig|194542.41.peg.1881","ABC transporter, substrate-binding protein (cluster 12, methionine/phosphonates)","V","Acyl-CoA dehydrogenase (EC 1.3.8.1), Mycobacterial subgroup FadE16","Fe-S oxidoreductases of moaA/nifB/pqqE family"]
["MP1xMP2","194542.41.con.0048",7855,"CTC","TTC",{"v":172804,"d":"172,804"},"2.0","0.33","Synon","gag","GAA","E","E",null,"fig|194542.41.peg.1677","Aconitate hydratase (EC 4.2.1.3) @ 2-methylisocitrate dehydratase (EC 4.2.1.99)","C, E","Transcriptional regulator, AcrR family","putative membrane protein"]
["MP1xMP2","194542.41.con.0048",8491,"TTCGTCAGTGGCGACGTCGTCGT","TT","2163.73","2.0","0.29","Deletion","aacgacgacgtcgccactgacgaa","aAA","NDDVATDE","K",null,"fig|194542.41.peg.1677","Aconitate hydratase (EC 4.2.1.3) @ 2-methylisocitrate dehydratase (EC 4.2.1.99)","C, E","Transcriptional regulator, AcrR family","putative membrane protein"]
["MP1xMP2","194542.41.con.0032",3960,"ACGATCGCGGC","AC","1214.92","2.0","0.25","Deletion","acgatcgcggcg","ACg","TIAA","T",null,"fig|194542.41.peg.1259","Acyl-[acyl-carrier protein] desaturase DesA2 (EC 1.14.19.2)","I","Serine hydroxymethyltransferase (EC 2.1.2.1)","Predicted ATPase related to phosphate starvation-inducible protein PhoH"]
["MP1xMP2","194542.41.con.0050",37219,"GGGCCGGTGGCCAGGCCCACCCG","GG","2194.34","2.0","0.29","Deletion","cgggtgggcctggccaccggcccg","CCg","RVGLATGP","P",null,"fig|194542.41.peg.1821","Adenylate cyclase (EC 4.6.1.1)","T","putative membrane protein","tRNA-Leu-CAA"]
["MP1xMP2","194542.41.con.0004",41916,"ATG","GGT",{"v":475613,"d":"475,613"},"3.0","0.33","Nonsyn","cat","ACC","H","T",null,"fig|194542.41.peg.226","Alcohol dehydrogenase (EC 1.1.1.1)","E, R","FAD/FMN-containing dehydrogenases","Propionyl-CoA thioesterase activity"]
["MP1xMP2","194542.41.con.0009",102291,"TG","GG",{"v":110192,"d":"110,192"},"3.0","0.50","Nonsyn","cgcacc","cgCCcc","RT","RP",null,"fig|194542.41.peg.562","Aliphatic amidase AmiE (EC 3.5.1.4)","C","putative membrane protein","hypothetical protein"]
["MP1xMP2","194542.41.con.0110",78197,"CA","AA",{"v":291909,"d":"291,909"},"4.0","0.31","Synon","ctg","cTT","L","L",null,"fig|194542.41.peg.3625","Alkane-1 monooxygenase (EC 1.14.15.3)","I","Rubredoxin","Cationic amino acid transport integral membrane protein"]
["MP1xMP2","194542.41.con.0127",51525,"CA","AC",{"v":522827,"d":"522,827"},"2.0","0.33","Nonsyn","gtg","gGT","V","G",null,"fig|194542.41.peg.4169","Alkyl sulfatase and related hydrolases, MBL-fold metallo-hydrolase superfamily","I","Acyl-CoA dehydrogenase (EC 1.3.8.1), Mycobacterial subgroup FadE36","19 kDa lipoprotein antigen precursor"]
["MP1xMP2","194542.41.con.0073",85574,"CGGGGGC","CTGGGGC",{"v":615836,"d":"615,836"},"2.0","0.33","Synon","tcgggggca","tCTGGGGCa","SGA","SGA",null,"fig|194542.41.peg.2523","Alkyldihydroxyacetonephosphate synthase (EC 2.5.1.26)","L","Transcriptional regulator, AcrR family","Diacylglycerol kinase-related protein"]
["MP1xMP2","194542.41.con.0078",53630,"CGGGGGT","CGGGGGG",{"v":166459,"d":"166,459"},"5.0","0.62","Synon","ggcgggggt","ggCGGGGGG","GGG","GGG",null,"fig|194542.41.peg.2767","Alpha-glucosidase (EC 3.2.1.20)","G","Hemoglobin-like protein HbO","hypothetical protein"]
["MP1xMP2","194542.41.con.0073",132912,"AT","GG",{"v":191004,"d":"191,004"},"2.0","0.25","Nonsyn","atc","CCc","I","P",null,"fig|194542.41.peg.2572","Amidohydrolase","Q","hypothetical protein","hypothetical protein"]
["MP1xMP2","194542.41.con.0126",50817,"TCCC","TC",{"v":609994,"d":"609,994"},"2.0","0.33","Deletion","tgggga","tgGA","WG","W","yes","fig|194542.41.peg.4104","Amidohydrolase EgtC (hercynylcysteine sulfoxide synthase)","Q","L-histidine N(alpha)-methyltransferase (EC 2.1.1.44)","Iron(II)-dependent oxidoreductase EgtB (hercynine sythase)"]
["MP1xMP2","194542.41.con.0123",56070,"CTC","CC",{"v":807811,"d":"807,811"},"2.0","0.22","Deletion","gag","GG","E",null,"yes","fig|194542.41.peg.3961","Arylamine N-acetyltransferase (EC 2.3.1.5)","K","Valine--pyruvate aminotransferase (EC 2.6.1.66)","hypothetical protein"]
["MP1xMP2","194542.41.con.0127",26894,"GGCC","GC",{"v":550118,"d":"550,118"},"2.0","0.33","Deletion","tgggcc","tgGC","WA","W","yes","fig|194542.41.peg.4138","ATP-dependent DNA ligase (EC 6.5.1.1) LigC","D","ATP-dependent DNA ligase (EC 6.5.1.1)","hypothetical protein"]
["MP1xMP2","194542.41.con.0018",3294,"TG","GT",{"v":364988,"d":"364,988"},"2.0","0.29","Nonsyn","cccacc","ccACcc","PT","PP",null,"fig|194542.41.peg.874","Branched-chain acyl-CoA dehydrogenase (EC 1.3.99.12) @ Acyl-CoA dehydrogenase (EC 1.3.8.1), Mycobacterial subgroup FadE9","I","3-hydroxyisobutyrate dehydrogenase (EC 1.1.1.31)","Methylmalonate-semialdehyde dehydrogenase (EC 1.2.1.27)"]
["MP1xMP2","194542.41.con.0044",24558,"AT","CT",{"v":39932,"d":"39,932"},"2.0","0.29","Nonsyn","atc","CTc","I","L",null,"fig|194542.41.peg.1579","Carbamoyl-phosphate synthase large chain (EC 6.3.5.5)","I","Carbamoyl-phosphate synthase small chain (EC 6.3.5.5)","Orotidine 5'-phosphate decarboxylase (EC 4.1.1.23)"]
["MP1xMP2","194542.41.con.0078",42990,"GT","AC",{"v":431442,"d":"431,442"},"2.0","0.33","Nonsyn","acc","GTc","T","V",null,"fig|194542.41.peg.2757","Cell division trigger factor (EC 5.2.1.8)","D","ATP-dependent Clp protease proteolytic subunit ClpP (EC 3.4.21.92)","tRNA-Pro-TGG"]
["MP1xMP2","194542.41.con.0109",21231,"AT","TT",{"v":481607,"d":"481,607"},"3.0","0.38","Nonsyn","atg","TTg","M","L",null,"fig|194542.41.peg.3495","COG1180: Radical SAM, Pyruvate-formate lyase-activating enzyme like","C","Histidinol-phosphatase [alternative form] (EC 3.1.3.15)","Acyl-CoA dehydrogenase (EC 1.3.8.1), Mycobacterial subgroup FadE24"]
["MP1xMP2","194542.41.con.0127",8914,"CA","AC",{"v":386088,"d":"386,088"},"2.0","0.22","Nonsyn","cgcacc","cgACcc","RT","RP",null,"fig|194542.41.peg.4125","Cyclopropane-fatty-acyl-phospholipid synthase (EC 2.1.1.79)","I","FAD/FMN-containing dehydrogenases","DNA polymerase III subunits gamma and tau (EC 2.7.7.7)"]
["MP1xMP2","194542.41.con.0009",94576,"AT","TT",{"v":351906,"d":"351,906"},"3.0","0.20","Nonsyn","atc","AAc","I","N",null,"fig|194542.41.peg.550","Cyclopropane-fatty-acyl-phospholipid synthase PcaA (EC 2.1.1.79)","I","Possible mycolic acid synthesis protein UmaA1","hypothetical protein"]
["MP1xMP2","194542.41.con.0054",25338,"CT","TG",{"v":106926,"d":"106,926"},"2.0","0.22","Nonsyn","gcagcg","gcCAcg","AA","AT",null,"fig|194542.41.peg.2010","Cytochrome P450 143","Q","FtsK/SpoIIIE family protein EccC5, component of Type VII secretion system ESX-5","Ferredoxin Rv1786 @ Ferredoxin"]
["MP1xMP2","194542.41.con.0073",39412,"GGACCACCGTCGAGGTGCT","GT","2677.89","2.0","0.22","Deletion","gggaccaccgtcgaggtgctc","gGTc","GTTVEVL","G","yes","fig|194542.41.peg.2480","Cytosol aminopeptidase PepA (EC 3.4.11.1)","C","Adenylate cyclase (EC 4.6.1.1)","Oxidoreductase, short-chain dehydrogenase/reductase family (EC 1.1.1.-)"]
["MP1xMP2","194542.41.con.0037",15046,"ATCG","ACC",{"v":477558,"d":"477,558"},"5.0","0.45","Deletion","ggatcg","ggACC","GS","G","yes","fig|194542.41.peg.1433","DEAD-box ATP-dependent RNA helicase DeaD (","K","hypothetical protein","FIG143263: Glycosyl transferase / Lysophospholipid acyltransferase"]
["MP1xMP2","194542.41.con.0126",11277,"TCA","TAA",{"v":169491,"d":"169,491"},"2.0","0.29","Synon","gtgatg","gTTAtg","VM","VM",null,"fig|194542.41.peg.4062","Dipeptide transport system permease protein DppB (TC 3.A.1.5.2)","C","Dipeptide transport system permease protein DppC (TC 3.A.1.5.2)","Dipeptide-binding ABC transporter, periplasmic substrate-binding component (TC 3.A.1.5.2)"]
["MP1xMP2","194542.41.con.0126",10011,"CAA","AAA",{"v":425421,"d":"425,421"},"2.0","0.33","Nonsyn","ttg","TTT","L","F",null,"fig|194542.41.peg.4061","Dipeptide transport system permease protein DppC (TC 3.A.1.5.2)","C","Dipeptide transport ATP-binding protein DppD (TC 3.A.1.5.2)","Dipeptide transport system permease protein DppB (TC 3.A.1.5.2)"]
["MP1xMP2","194542.41.con.0073",14436,"TAG","CAG",{"v":384114,"d":"384,114"},"4.0","0.44","Nonsyn","ctagcg","cCAGcg","LA","PA",null,"fig|194542.41.peg.2459","DNA polymerase III epsilon subunit-related protein MSMEG4261","L","hypothetical protein","Cytochrome c oxidase polypeptide III (EC 1.9.3.1)"]
["MP1xMP2","194542.41.con.0081",1604,"GGGCGTCGGTCA","GA","2365.75","2.0","0.25","Deletion","gtgaccgacgcccac","gTCac","VTDAH","V","yes","fig|194542.41.peg.2815","DNA-binding protein","L","hypothetical protein","hypothetical protein"]
["MP1xMP2","194542.41.con.0128",74413,"CT","AG",{"v":301412,"d":"301,412"},"2.0","0.25","Nonsyn","gag","gCT","E","A",null,"fig|194542.41.peg.4274","DNA-dependent DNA polymerase beta chain","L","Transcriptional repressor TetR family ","putative membrane protein"]
["MP1xMP2","194542.41.con.0119",30157,"GCGCGAGTCGCTGGCCGAC","GC","2157.63","2.0","0.22","Deletion","cggcgcgagtcgctggccgac","cgGC","RRESLAD","R","yes","fig|194542.41.peg.3857","dTDP-glucose 4,6-dehydratase (EC 4.2.1.46)","M","Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases","dTDP-4-dehydrorhamnose 3,5-epimerase (EC 5.1.3.13)"]
["MP1xMP2","194542.41.con.0039",5272,"GCT","GT",{"v":174639,"d":"174,639"},"2.0","0.33","Deletion","gagctg","gACtg","EL","D","yes","fig|194542.41.peg.1455","Efflux ABC transporter, permease/ATP-binding protein SCO2464","V","hypothetical protein","Efflux ABC transporter, permease/ATP-binding protein SCO2463"]
["MP1xMP2","194542.41.con.0051",109323,"CA","GC",{"v":449832,"d":"449,832"},"2.0","0.29","Synon","ggcagg","ggGCgg","GR","GR",null,"fig|194542.41.peg.1959","Efflux transmembrane permease Rv1747 family ","I","Probable serine/threonine-protein kinase pknF (EC 2.7.11.1)","Putative uncharacterized protein BCG_1787"]
["MP1xMP2","194542.41.con.0032",51146,"CA","GC",{"v":44629,"d":"44,629"},"2.0","0.33","Nonsyn","gtg","gGC","V","G",null,"fig|194542.41.peg.1314","Enoyl-CoA hydratase (EC 4.2.1.17)","I","Enoyl-CoA hydratase (EC 4.2.1.17)","Alpha-methylacyl-CoA racemase (EC 5.1.99.4)"]
["MP1xMP2","194542.41.con.0048",32544,"CA","AA",{"v":479745,"d":"479,745"},"3.0","0.43","Synon","gccaac","gcAAac","AN","AN",null,"fig|194542.41.peg.1701","Esterase LipL","I","putative periplasmic protein kinase ArgK and related GTPases of G3E family","SAM-dependent methyltransferase"]
["MP1xMP2","194542.41.con.0015",36439,"GGTCGTCGTCG","GGTCGTTGTCG",{"v":486833,"d":"486,833"},"2.0","0.29","Nonsyn","ctcgacgacgacccg","ctCGACAACGACCcg","LDDDP","LDNDP",null,"fig|194542.41.peg.736","Exodeoxyribonuclease V gamma chain (EC 3.1.11.5)","S","Exodeoxyribonuclease V beta chain (EC 3.1.11.5)","Enoyl-CoA hydratase (EC 4.2.1.17)"]
["MP1xMP2","194542.41.con.0043",42444,"GCGCGATCGGGTC","GC","1688.32","2.0","0.33","Deletion","gcgcgatcgggtcgc","GCgc","ARSGR","A","yes","fig|194542.41.peg.1555","F420-dependent oxidoreductase","H","F420-dependent oxidoreductase","PPE family protein, SVP subgroup "]
["MP1xMP2","194542.41.con.0015",97438,"TGGGGGC","GGGGGGC","1131.25","4.0","0.40","Nonsyn","gtgggggcc","gGGGGGGCc","VGA","GGA",null,"fig|194542.41.peg.799","Ferredoxin reductase","C","Oxidoreductase, short-chain dehydrogenase/reductase family","hypothetical protein"]
["MP1xMP2","194542.41.con.0035",13751,"ATCGACGCGATT","AT","1276.97","4.0","0.50","Deletion","atcgacgcgatt","AT","IDAI",null,"yes","fig|194542.41.peg.1388","Glucose-1-phosphate adenylyltransferase (EC 2.7.7.27)","G","Predicted glycogen synthase, ADP-glucose transglucosylase (EC 2.4.1.21), Actinobacterial type"]
["MP1xMP2","194542.41.con.0059",39434,"GTTG","GTGG",{"v":144116,"d":"144,116"},"8.0","0.67","Nonsyn","gggttg","ggGTGG","GL","GW",null,"fig|194542.41.peg.2111","Glutamine synthetase-like protein","E","MFS-type transporter Rv1877 family ","Amidohydrolase"]
["MP1xMP2","194542.41.con.0126",44168,"CCAACACGTC","CC",{"v":506526,"d":"506,526"},"4.0","0.44","Deletion","gacgtgttgggt","GGgt","DVLG","G","yes","fig|194542.41.peg.4095","Glycerol kinase (EC 2.7.1.30)","C","putative membrane protein","Glycerol kinase (EC 2.7.1.30)"]
["MP1xMP2","194542.41.con.0126",44444,"GG","AA",{"v":102308,"d":"102,308"},"8.0","1.00","Nonsyn","cgccag","cgTTag","RQ","R*",null,"fig|194542.41.peg.4095","Glycerol kinase (EC 2.7.1.30)","C","putative membrane protein","Glycerol kinase (EC 2.7.1.30)"]
["MP1xMP2","194542.41.con.0126",44925,"ACCCCCCCCG","ACCCCCCCG",{"v":520932,"d":"520,932"},"73.0","0.96","Deletion","cggggggggtgt","CGGGGGGGTgt","RGGC","RGG","yes","fig|194542.41.peg.4096","Glycerol kinase (EC 2.7.1.30)","C","Glycerol kinase (EC 2.7.1.30)","toxin VapC48 @ Toxin 1, PIN domain"]
["MP1xMP2","194542.41.con.0127",80240,"CGGGGGGC","CGGTGGGC",{"v":485257,"d":"485,257"},"2.0","0.29","Nonsyn","tcggggggc","tCGGTGGGC","SGG","SVG",null,"fig|194542.41.peg.4199","Heteromeric decaprenylphosphoryl-beta-D-ribose 2'-epimerase (EC 1.1.98.3) subunit DprE1","C","Decaprenyl-monophosphoryl-beta-D-arabinose (DPA) translocase to periplasm","Heteromeric decaprenylphosphoryl-beta-D-ribose 2'-epimerase (EC 1.1.1.333) subunit DprE2"]
["MP1xMP2","194542.41.con.0078",4320,"ACCCCCA","ACCCCCG",{"v":116775,"d":"116,775"},"9.0","0.56","Nonsyn","ctgggggtg","cCGGGGGTg","LGV","PGV",null,"fig|194542.41.peg.2718","Hydrogen peroxide-inducible genes activator ","C","Gamma-glutamyl phosphate reductase (EC 1.2.1.41)","hypothetical protein"]
["MP1xMP2","194542.41.con.0001",24758,"AC","TT",{"v":114202,"d":"114,202"},"2.0","0.29","Nonsyn","aagttc","aaAAtc","KF","KI",null,"fig|194542.41.peg.20","hypothetical protein","S","Membrane protein EccB2, component of Type VII secretion system ESX-2","Vegetative cell wall protein gp1 precursor"]
["MP1xMP2","194542.41.con.0002",16809,"GAG","GG",{"v":521831,"d":"521,831"},"2.0","0.29","Deletion","gtgagc","gtGGc","VS","V","yes","fig|194542.41.peg.144","hypothetical protein","S","Hydrogenase-4 component G","hypothetical protein"]
["MP1xMP2","194542.41.con.0004",26279,"TG","CT",{"v":134826,"d":"134,826"},"3.0","0.21","Nonsyn","gca","gAG","A","E",null,"fig|194542.41.peg.210","hypothetical protein","S","Quinone oxidoreductase (EC 1.6.5.5)","hypothetical protein"]
["MP1xMP2","194542.41.con.0009",95467,"GT","CG",{"v":111442,"d":"111,442"},"4.0","0.67","Nonsyn","acg","CGg","T","R",null,"fig|194542.41.peg.552","hypothetical protein","S","hypothetical protein","Transcriptional regulator, AcrR family"]
["MP1xMP2","194542.41.con.0015",108150,"ACCCCCCT","ACCCTCCT","1142.75","2.0","0.33","Nonsyn","accccccta","ACCCTCCTa","TPL","TLL",null,"fig|194542.41.peg.812","HYPOTHETICAL PROTEIN","S","hypothetical protein","hypothetical protein"]
["MP1xMP2","194542.41.con.0018",46447,"TGA","GGA",{"v":264458,"d":"264,458"},"2.0","0.29","Nonsyn","ctgacc","cGGAcc","LT","RT",null,"fig|194542.41.peg.921","hypothetical protein","S","Transcriptional regulator, GntR family","PF00070 family, FAD-dependent NAD(P)-disulphide oxidoreductase"]
["MP1xMP2","194542.41.con.0032",24935,"TGC","TC",{"v":134868,"d":"134,868"},"4.0","0.67","Deletion","gatgcg","gaTCg","DA","D","yes","fig|194542.41.peg.1287","hypothetical protein","S","Adenylate cyclase (EC 4.6.1.1)","Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49)"]
["MP1xMP2","194542.41.con.0051",37713,"TGGGGGGT","TGGGGGGG","514.03","2.0","0.33","Nonsyn","tggggggtg","TGGGGGGGg","WGV","WGG",null,"fig|194542.41.peg.1879","hypothetical protein","S","Soluble secreted antigen MPT53 precursor","Acyl-CoA dehydrogenase (EC 1.3.8.1), Mycobacterial subgroup FadE16"]
["MP1xMP2","194542.41.con.0052",8115,"TG","GG",{"v":411446,"d":"411,446"},"4.0","0.21","Nonsyn","tttgcc","ttGGcc","FA","LA",null,"fig|194542.41.peg.1972","hypothetical protein","S","Nitrate reductase [NADH] (EC 1.7.1.1)","Cutinase"]
["MP1xMP2","194542.41.con.0054",14300,"AT","GA",{"v":164959,"d":"164,959"},"2.0","0.22","Nonsyn","atc","TCc","I","S",null,"fig|194542.41.peg.2003","hypothetical protein","S","hypothetical protein","hypothetical protein"]
["MP1xMP2","194542.41.con.0099",10512,"TTTG","CCGA",{"v":655459,"d":"655,459"},"61.0","0.97","Nonsyn","cacaaa","caTCGG","HK","HR",null,"fig|194542.41.peg.3155","hypothetical protein","S","CRISPR-associated endoribonuclease Cas6"]
["MP1xMP2","194542.41.con.0102",3914,"AGC","AC",{"v":391428,"d":"391,428"},"2.0","0.33","Deletion","gagcat","gACat","EH","D","yes","fig|194542.41.peg.3178","hypothetical protein","S","PROBABLE CONSERVED TRANSMEMBRANE ALANINE RICH PROTEIN","Prolyl-tRNA synthetase (EC 6.1.1.15), bacterial type"]
["MP1xMP2","194542.41.con.0110",160304,"CG","AT",{"v":107924,"d":"107,924"},"6.0","1.00","Nonsyn","acg","aAT","T","N",null,"fig|194542.41.peg.3709","hypothetical protein","S","transcriptional regulator, AfsR/DnrI/RedD family"]
["MP1xMP2","194542.41.con.0125",33721,"GGTG","GG",{"v":205084,"d":"205,084"},"2.0","0.29","Deletion","gtcacc","gtCC","VT","V","yes","fig|194542.41.peg.4045","hypothetical protein","S","hypothetical protein","hypothetical protein"]
["MP1xMP2","194542.41.con.0127",41385,"CTT","CCT",{"v":109159,"d":"109,159"},"3.0","0.43","Nonsyn","ctt","CCT","L","P",null,"fig|194542.41.peg.4154","hypothetical protein","S","PE family protein ","hypothetical protein"]
["MP1xMP2","194542.41.con.0128",65707,"TCT","TCC",{"v":372909,"d":"372,909"},"6.0","0.67","Nonsyn","catctc","caTCCc","HL","HP",null,"fig|194542.41.peg.4260","hypothetical protein","S","hypothetical protein","hypothetical protein"]
["MP1xMP2","194542.41.con.0048",51752,"TG","CA",{"v":164739,"d":"164,739"},"4.0","0.67","Nonsyn","gacatc","gaTGtc","DI","DV",null,"fig|194542.41.peg.1722","hypothetical protein Rv1516c","S","hypothetical protein","hypothetical protein"]
["MP1xMP2","194542.41.con.0073",70042,"TGCGCGCG","TGCGTG","1486.94","2.0","0.20","Deletion","ttgcgcgcg","tTGCGTG","LRA","LR","yes","fig|194542.41.peg.2508","hypothetical protein Rv2237","S","Adenosylcobinamide-phosphate synthase (EC 6.3.1.10)","hypothetical protein"]
["MP1xMP2","194542.41.con.0104",40816,"CA","AC",{"v":107615,"d":"107,615"},"2.0","0.29","Nonsyn","ggtgac","ggGTac","GD","GY",null,"fig|194542.41.peg.3235","Iron utilization protein","K","Site-specific tyrosine recombinase XerC","Rossmann fold nucleotide-binding protein Smf possibly involved in DNA uptake"]
["MP1xMP2","194542.41.con.0060",15437,"GAGCGCCAAGCGCCAA","GAGCGCCAA",{"v":648036,"d":"648,036"},"213.0","1.00","Deletion","ttgagcgccaagcgccaa","ttGAGCGCCAA","LSAKRQ","LSA","yes","fig|194542.41.peg.2156","Isocitrate lyase (EC 4.1.3.1), group III, Mycobacterial type ICL2","C","hypothetical protein","PPE family protein, MPTR subgroup "]
["MP1xMP2","194542.41.con.0071",4293,"TG","GC",{"v":134204,"d":"134,204"},"2.0","0.33","Nonsyn","cat","GCt","H","A",null,"fig|194542.41.peg.2394","L-cysteine:1D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase MshC (EC 6.3.1.13)","S","Oxidoreductase, short-chain dehydrogenase/reductase family","3'(2'),5'-bisphosphate nucleotidase (EC 3.1.3.7)"]
["MP1xMP2","194542.41.con.0063",23505,"TCGGCGGCGGC","GCGGCGGCGGC",{"v":764792,"d":"764,792"},"2.0","0.33","Nonsyn","gccgccgccgac","GCCGCCGCCGCc","AAAD","AAAA",null,"fig|194542.41.peg.2231","Lead, cadmium, zinc and mercury transporting ATPase (EC 3.6.3.3) (EC 3.6.3.5)","S","Programmed cell death antitoxin YdcD","hypothetical protein"]
["MP1xMP2","194542.41.con.0015",43423,"CGA","CAA",{"v":449832,"d":"449,832"},"2.0","0.29","Synon","ccgaag","cCAAag","PK","PK",null,"fig|194542.41.peg.747","LSU ribosomal protein L11p (L12e)","J","Transcription antitermination protein NusG","LSU ribosomal protein L1p (L10Ae)"]
["MP1xMP2","194542.41.con.0004",63703,"CA","AC",{"v":288817,"d":"288,817"},"2.0","0.22","Nonsyn","gacacc","gaACcc","DT","EP",null,"fig|194542.41.peg.247","Lysophospholipase (EC 3.1.1.5)","I","RNA polymerase ECF-type sigma factor","hypothetical protein Rv0184"]
["MP1xMP2","194542.41.con.0015",46949,"CC","AC",{"v":452931,"d":"452,931"},"2.0","0.33","Synon","ggg","gGT","G","G",null,"fig|194542.41.peg.751","Methoxy mycolic acid synthase MmaA2 (EC 2.1.1.79)","H","Methoxy mycolic acid synthase MmaA3 (EC 2.1.1.79)","Methoxy mycolic acid synthase MmaA1 (EC 2.1.1.79)"]
["MP1xMP2","194542.41.con.0080",12169,"GA","TG",{"v":107098,"d":"107,098"},"2.0","0.25","Nonsyn","tcg","CAg","S","Q",null,"fig|194542.41.peg.2800","Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4)","Q","Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4)","Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit B (EC 2.8.3.5)"]
["MP1xMP2","194542.41.con.0105",74645,"GT","CG",{"v":989969,"d":"989,969"},"3.0","0.43","Nonsyn","tac","tCG","Y","S",null,"fig|194542.41.peg.3300","methyltransferase, FkbM family domain protein","Q","hypothetical protein","hypothetical protein"]
["MP1xMP2","194542.41.con.0073",166037,"CA","AG",{"v":748938,"d":"748,938"},"2.0","0.20","Nonsyn","tgg","CTg","W","L",null,"fig|194542.41.peg.2613","MFS-type transporter Rv2333c family ","P","NAD-dependent malic enzyme (EC 1.1.1.38)","hypothetical protein"]
["MP1xMP2","194542.41.con.0036",17714,"TCC","TAC","332.56","2.0","0.22","Nonsyn","gtggac","gtGTAc","VD","VY",null,"fig|194542.41.peg.1410","Mg/Co/Ni transporter MgtE, CBS domain-containing","P","FIG00816212: Putative membrane protein","Basic proline-rich protein"]
["MP1xMP2","194542.41.con.0118",960,"CGA","CC",{"v":175234,"d":"175,234"},"2.0","0.33","Deletion","tcg","GG","S",null,"yes","fig|194542.41.peg.3821","Mobile element protein","X",null,"hypothetical protein"]
["MP1xMP2","194542.41.con.0128",47808,"GA","CC",{"v":826611,"d":"826,611"},"2.0","0.33","Nonsyn","aatcca","aaGGca","NP","KA",null,"fig|194542.41.peg.4237","Mobile element protein","X","Polyketide synthase modules and related proteins @ Long-chain fatty-acid-AMP ligase, Mycobacterial subgroup FadD23","Resolvase"]
["MP1xMP2","194542.41.con.0129",104,"TGCG","GGCG","1365.19","5.0","0.31","Nonsyn","gtgcgg","gGGCGg","VR","GR",null,"fig|194542.41.peg.4299","Mobile element protein","X",null,"Mobile element protein"]
["MP1xMP2","194542.41.con.0129",1234,"ACC","CCC","2161.41","5.0","0.50","Nonsyn","taccag","tCCCag","YQ","SQ",null,"fig|194542.41.peg.4300","Mobile element protein","X","Mobile element protein"]
["MP1xMP2","194542.41.con.0129",234,"CGG","GGG",{"v":814218,"d":"814,218"},"5.0","0.36","Synon","gccggc","gcGGGc","AG","AG",null,"fig|194542.41.peg.4299","Mobile element protein","X",null,"Mobile element protein"]
["MP1xMP2","194542.41.con.0129",319,"GC","CG","1519.44","2.0","0.29","Nonsyn","gcg","CGg","A","R",null,"fig|194542.41.peg.4299","Mobile element protein","X",null,"Mobile element protein"]
["MP1xMP2","194542.41.con.0129",340,"GCT","GCC",{"v":411188,"d":"411,188"},"43.0","0.77","Synon","gct","GCC","A","A",null,"fig|194542.41.peg.4299","Mobile element protein","X",null,"Mobile element protein"]
["MP1xMP2","194542.41.con.0129",434,"GTG","GTT",{"v":341583,"d":"341,583"},"10.0","0.59","Nonsyn","cggtgg","cgGTTg","RW","RL",null,"fig|194542.41.peg.4300","Mobile element protein","X","Mobile element protein"]
["MP1xMP2","194542.41.con.0129",702,"CGC","CGG",{"v":530612,"d":"530,612"},"5.0","0.24","Synon","cgc","CGG","R","R",null,"fig|194542.41.peg.4300","Mobile element protein","X","Mobile element protein"]
["MP1xMP2","194542.41.con.0133",1178,"AC","CT",{"v":140439,"d":"140,439"},"2.0","0.29","Nonsyn","gaacgc","gaCTgc","ER","DC",null,"fig|194542.41.peg.4304","Mobile element protein","X"]
["MP1xMP2","194542.41.con.0139",467,"TG","GG",{"v":207025,"d":"207,025"},"5.0","0.50","Nonsyn","ctg","cGG","L","R",null,"fig|194542.41.peg.4312","Mobile element protein","X",null,"Mobile element protein"]
["MP1xMP2","194542.41.con.0009",20598,"AG","CA",{"v":625966,"d":"625,966"},"2.0","0.33","Nonsyn","agc","CAc","S","H",null,"fig|194542.41.peg.481","Modular polyketide synthase","Q","Polyketide synthase modules and related proteins @ Long-chain fatty-acid-AMP ligase, Mycobacterial subgroup FadD30","Glucose-6-phosphate dehydrogenase (coenzyme F420) (EC 1.1.98.2)"]
["MP1xMP2","194542.41.con.0105",60157,"CTC","CC",{"v":689951,"d":"689,951"},"2.0","0.29","Deletion","gag","GG","E",null,"yes","fig|194542.41.peg.3291","Modular polyketide synthase","Q","Lipoprotein LppX","Modular polyketide synthase @ Long-chain fatty-acid-CoA ligase (EC 6.2.1.3), Mycobacterial subgroup FadD22"]
["MP1xMP2","194542.41.con.0004",83205,"CGGCCGCTGCGAGAGGCCGCTGCGAGAG","CG","3232.42","44.0","1.00","Deletion","cggccgctgcgagaggccgctgcgagaggc","CGgc","RPLREAAARG","R","yes","fig|194542.41.peg.263","Molybdopterin-binding oxidoreductase, [4Fe-4S] cluster binding and molybdopterin cofactor binding site containing","C","Transcriptional regulator, AcrR family","Molybdopterin-binding oxidoreductase, [4Fe-4S] cluster binding and molybdopterin cofactor binding site containing"]
["MP1xMP2","194542.41.con.0128",71786,"ACC","GCC",{"v":180104,"d":"180,104"},"2.0","0.29","Nonsyn","ccggtg","ccGGCg","PV","PA",null,"fig|194542.41.peg.4272","Monooxygenase EthA, implicated in activation of thiocarbamide-containing pro-drugs","C","Ribonuclease E inhibitor RraA","Transcriptional repressor TetR family "]
["MP1xMP2","194542.41.con.0051",54611,"AC","GG",{"v":109426,"d":"109,426"},"2.0","0.29","Nonsyn","acc","GGc","T","G",null,"fig|194542.41.peg.1898","NAD kinase (EC 2.7.1.23)","M","23S rRNA (cytidine(1920)-2'-O)-methyltransferase (EC 2.1.1.226) @ 16S rRNA (cytidine(1409)-2'-O)-methyltransferase (EC 2.1.1.227)","DNA repair protein RecN"]
["MP1xMP2","194542.41.con.0078",14825,"GCCTCGGCGCTG","GA","1055.84","2.0","0.29","Deletion","cccagcgccgaggcg","ccTCg","PSAEA","P","yes","fig|194542.41.peg.2732","NAD synthetase (EC 6.3.1.5) / Glutamine amidotransferase chain of NAD synthetase","M","Putative protein-S-isoprenylcysteine methyltransferase","Glutamate 5-kinase (EC 2.7.2.11) / RNA-binding C-terminal domain PUA"]
["MP1xMP2","194542.41.con.0110",136434,"ACCCCCA","CCCCCCA",{"v":475108,"d":"475,108"},"3.0","0.43","Nonsyn","ttgggggtg","tTGGGGGGg","LGV","LGG",null,"fig|194542.41.peg.3680","NAD(P)H quinone reductase LpdA (EC 1.6.5.2)","H","Glycerol-3-phosphate dehydrogenase (EC 1.1.5.3)","AIG2-like domain protein"]
["MP1xMP2","194542.41.con.0121",845,"TGGGGGGA","TGGGGGA",{"v":142504,"d":"142,504"},"2.0","0.25","Deletion","ctgggggga","cTGGGGGA","LGG","LG","yes","fig|194542.41.peg.3871","patatin-related protein","S","PPE family protein, SVP subgroup ","Wax ester synthase/acyl-CoA:diacylglycerol acyltransferase"]
["MP1xMP2","194542.41.con.0004",1451,"TGGGGGGT","GGGGGGGT",{"v":615836,"d":"615,836"},"2.0","0.33","Synon","ggtggggggtca","ggGGGGGGGTca","GGGS","GGGS",null,"fig|194542.41.peg.184","Periplasmic serine protease","O","PE_PGRS family protein ","Trehalose synthase (EC 5.4.99.16) @ Alpha-amylase (EC 3.2.1.1)"]
["MP1xMP2","194542.41.con.0105",13888,"AT","CC",{"v":505388,"d":"505,388"},"2.0","0.20","Nonsyn","cat","cCC","H","P",null,"fig|194542.41.peg.3273","Phenolpthiocerol synthesis type-I polyketide synthase PpsA (EC 2.3.1.41)","J","Polyketide synthase modules and related proteins @ Long-chain fatty-acid-AMP ligase, Mycobacterial subgroup FadD26","Phenolpthiocerol synthesis type-I polyketide synthase PpsB (EC 2.3.1.41)"]
["MP1xMP2","194542.41.con.0105",20655,"ACC","CCC",{"v":557927,"d":"557,927"},"2.0","0.29","Synon","acaccc","acCCCc","TP","TP",null,"fig|194542.41.peg.3275","Phenolpthiocerol synthesis type-I polyketide synthase PpsB (EC 2.3.1.41)","J","Phenolpthiocerol synthesis type-I polyketide synthase PpsB (EC 2.3.1.41)","Phenolpthiocerol synthesis type-I polyketide synthase PpsC"]
["MP1xMP2","194542.41.con.0074",2984,"AGC","CCA",{"v":243239,"d":"243,239"},"2.0","0.33","Nonsyn","ccgctg","ccTGGg","PL","PG",null,"fig|194542.41.peg.2630","Phospholipase C (EC 3.1.4.3)","I","Phospholipase C (EC 3.1.4.3)","Phospholipase C (EC 3.1.4.3)"]
["MP1xMP2","194542.41.con.0128",31032,"AT","CA",{"v":108648,"d":"108,648"},"2.0","0.33","Nonsyn","atg","TGg","M","W",null,"fig|194542.41.peg.4230","PKS-associated protein PapA, condensation domain-containing","S","Putative uncharacterized protein BCG_3881","hypothetical protein"]
["MP1xMP2","194542.41.con.0049",7440,"CT","TG",{"v":447766,"d":"447,766"},"2.0","0.25","Nonsyn","cag","cCA","Q","P",null,"fig|194542.41.peg.1736","Polyketide synthase / Multifunctional mycocerosic acid synthase membrane-associated mas","Q","Uncharacterized protein Rv1526c/MT1577","PROBABLE CONSERVED POLYKETIDE SYNTHASE ASSOCIATED PROTEIN PAPA4"]
["MP1xMP2","194542.41.con.0015",125287,"CA","TT",{"v":113635,"d":"113,635"},"2.0","0.33","Nonsyn","ttcacc","ttTTcc","FT","FS",null,"fig|194542.41.peg.840","Possible protease IV SppA (endopeptidase IV) (signal peptide peptidase)","S","LSU ribosomal protein L15p (L27Ae)","O-methyltransferase"]
["MP1xMP2","194542.41.con.0087",31568,"CA","GA","516.67","5.0","0.33","Nonsyn","caa","GAa","Q","E",null,"fig|194542.41.peg.3011","Possible secreted alanine rich protein","S","hypothetical protein","Inositol-1-monophosphatase (EC 3.1.3.25)"]
["MP1xMP2","194542.41.con.0026",59545,"CGG","CGT",{"v":625873,"d":"625,873"},"2.0","0.33","Nonsyn","tccggg","tcCGTg","SG","SV",null,"fig|194542.41.peg.1186","Potassium-transporting ATPase C chain (EC 3.6.3.12) (TC 3.A.3.7.1)","P","Potassium-transporting ATPase B chain (EC 3.6.3.12) (TC 3.A.3.7.1)","Two component system sensor histidine kinase TrcS"]
["MP1xMP2","194542.41.con.0123",45257,"GGTG","GG",{"v":168089,"d":"168,089"},"4.0","0.57","Deletion","ttcacc","ttCC","FT","F","yes","fig|194542.41.peg.3951","Probable acetyl-CoA acetyltransferase FadA6 (EC 2.3.1.9)","I","hypothetical protein","Transcriptional factor in putative operon for degradation of branched-chain alkanes, nitroalkanes and may be also cyclic ketones, alkenoic acids"]
["MP1xMP2","194542.41.con.0110",125407,"GA","CA",{"v":765674,"d":"765,674"},"3.0","0.23","Nonsyn","gaa","CAa","E","Q",null,"fig|194542.41.peg.3673","Probable ATP-dependent helicase lhr (EC 3.6.1.-)","R","Transcriptional regulator Rv3295, AcrR family","Endonuclease VIII"]
["MP1xMP2","194542.41.con.0064",32350,"CA","AC",{"v":126353,"d":"126,353"},"2.0","0.29","Nonsyn","gtg","gGT","V","G",null,"fig|194542.41.peg.2294","Probable carboxylesterase LipT (EC 3.1.1.-)","C","putative membrane protein","Probable lipoprotein lppI"]
["MP1xMP2","194542.41.con.0064",32354,"AT","TG",{"v":515079,"d":"515,079"},"2.0","0.20","Nonsyn","atg","CAg","M","Q",null,"fig|194542.41.peg.2294","Probable carboxylesterase LipT (EC 3.1.1.-)","C","putative membrane protein","Probable lipoprotein lppI"]
["MP1xMP2","194542.41.con.0128",84726,"TGGTCGCGTGCAGCGGCGG","TG","2521.22","2.0","0.25","Deletion","ctggtcgcgtgcagcggcggc","cTGc","LVACSGG","L","yes","fig|194542.41.peg.4281","Probable forkhead-associated protein","E","hypothetical protein","Secreted protein EspE, component of Type VII secretion system ESX-1"]
["MP1xMP2","194542.41.con.0082",16302,"AGCGCCCCCGGTCGGCTGG","AG","1735.23","2.0","0.25","Deletion","ccagcgcccccggtcggctgg","ccAG","PAPPVGW","P","yes","fig|194542.41.peg.2867","PROBABLE PROLINE AND GLYCINE RICH TRANSMEMBRANE PROTEIN","M","Replication-associated recombination protein RarA","hypothetical protein"]
["MP1xMP2","194542.41.con.0121",26492,"CA","AC","119.14","2.0","0.20","Nonsyn","gtg","gGT","V","G",null,"fig|194542.41.peg.3896","Probable short-chain type dehydrogenase/reductase (EC 1.-.-.-)","R","Conserved hypothetical integral membrane protein YrbEa","Ferredoxin"]
["MP1xMP2","194542.41.con.0104",47167,"TGC","TC",{"v":237219,"d":"237,219"},"2.0","0.33","Deletion","ggcacc","gGAcc","GT","G","yes","fig|194542.41.peg.3240","Putative formate dehydrogenase oxidoreductase protein","I","Sulfur carrier protein FdhD","Protein often found in Actinomycetes clustered with signal peptidase and/or RNaseHII"]
["MP1xMP2","194542.41.con.0008",37708,"GCGAC","GC",{"v":392359,"d":"392,359"},"2.0","0.29","Deletion","ggcgac","gGC","GD","G",null,"fig|194542.41.peg.433","putative membrane protein","M","hypothetical protein","Mg/Co/Ni transporter MgtE, CBS domain-containing"]
["MP1xMP2","194542.41.con.0009",87335,"CA","GA",{"v":222194,"d":"222,194"},"3.0","0.20","Synon","ggcaag","ggGAag","GK","GK",null,"fig|194542.41.peg.543","putative membrane protein","M","Dihydrolipoamide dehydrogenase (EC 1.8.1.4)","hypothetical protein"]
["MP1xMP2","194542.41.con.0037",8541,"TG","GG",{"v":295349,"d":"295,349"},"3.0","0.27","Synon","gca","gCC","A","A",null,"fig|194542.41.peg.1429","putative membrane protein","M","Dihydrolipoamide succinyltransferase component (E2) of 2-oxoglutarate dehydrogenase complex (EC 2.3.1.61) / 2-oxoglutarate dehydrogenase E1 component (EC 1.2.4.2) @ 2-oxoglutarate decarboxylase (EC 4.1.1.71) @ 2-hydroxy-3-oxoadipate synthase (EC 2.2.1.5)","Superfamily I DNA and RNA helicases and helicase subunits"]
["MP1xMP2","194542.41.con.0068",29835,"ATTGCCGCGGT","AT","1098.02","2.0","0.25","Deletion","attgccgcggtt","ATt","IAAV","I",null,"fig|194542.41.peg.2339","putative membrane protein","M","Vegetative cell wall protein gp1 precursor","Vegetative cell wall protein gp1 precursor"]
["MP1xMP2","194542.41.con.0097",25218,"CGGTGGTGGTGGTGGTG","CGGTGGTGGTGGTG",{"v":440711,"d":"440,711"},"100.0","0.97","Deletion","gcggtggtggtggtggtg","gCGGTGGTGGTGGTG","AVVVVV","AVVVV",null,"fig|194542.41.peg.3124","putative membrane protein","M","hypothetical protein","Putative hydrolase"]
["MP1xMP2","194542.41.con.0039",52030,"CCGCGCGCGCGC","CCGCGCGCGC",{"v":142504,"d":"142,504"},"2.0","0.25","Deletion","ccgcgcgcgcgc","CCGCGCGCGC","PRAR","PRA","yes","fig|194542.41.peg.1499","putative secreted protein","O","ATP synthase epsilon chain (EC 3.6.3.14)"]
["MP1xMP2","194542.41.con.0110",149217,"CA","AG",{"v":444322,"d":"444,322"},"2.0","0.20","Nonsyn","tgc","CTc","C","L",null,"fig|194542.41.peg.3693","Pyrimidine-nucleoside phosphorylase (EC 2.4.2.2)","L","Adenosine deaminase (EC 3.5.4.4)","Cytidine deaminase (EC 3.5.4.5)"]
["MP1xMP2","194542.41.con.0049",25784,"AC","CA",{"v":563894,"d":"563,894"},"2.0","0.33","Nonsyn","acc","CAc","T","H",null,"fig|194542.41.peg.1749","Ribosomal large subunit pseudouridine synthase D (EC 5.4.99.23)","S","Lipoprotein signal peptidase (EC 3.4.23.36)","Glycolipoprotein LprI, lysozyme inhibitor"]
["MP1xMP2","194542.41.con.0009",68674,"TG","GT",{"v":502893,"d":"502,893"},"2.0","0.25","Nonsyn","cac","ACc","H","T",null,"fig|194542.41.peg.523","S-adenosyl-L-methionine dependent methyltransferase, similar to cyclopropane-fatty-acyl-phospholipid synthase","C","hypothetical protein","hypothetical protein"]
["MP1xMP2","194542.41.con.0009",30236,"CT","GC",{"v":506495,"d":"506,495"},"2.0","0.25","Nonsyn","agc","GCc","S","A",null,"fig|194542.41.peg.485","Serine/threonine protein kinase","T","Acetate kinase (EC 2.7.2.1)","Glutamine ABC transporter, substrate-binding protein GlnH"]
["MP1xMP2","194542.41.con.0023",23243,"TGA","TTA",{"v":137593,"d":"137,593"},"2.0","0.29","Nonsyn","ggtgac","ggTTAc","GD","GY",null,"fig|194542.41.peg.1022","Sphingomyelinase (EC 3.1.4.12) ","S","hypothetical protein","Citrate synthase (si) (EC 2.3.3.1)"]
["MP1xMP2","194542.41.con.0040",2794,"GTC","ACT",{"v":167801,"d":"167,801"},"11.0","1.00",{"$nulls":6},"fig|194542.41.rna.19","SSU rRNA ## 16S rRNA, small subunit ribosomal RNA","S","UDP-N-acetylglucosamine 1-carboxyvinyltransferase (EC 2.5.1.7)","hypothetical protein"]
["MP1xMP2","194542.41.con.0040",3361,"TCAT","CTTA",{"v":973279,"d":"973,279"},"16.0","1.00",{"$nulls":6},"fig|194542.41.rna.19","SSU rRNA ## 16S rRNA, small subunit ribosomal RNA","S","UDP-N-acetylglucosamine 1-carboxyvinyltransferase (EC 2.5.1.7)","hypothetical protein"]
["MP1xMP2","194542.41.con.0051",82385,"CG","GC",{"v":172002,"d":"172,002"},"2.0","0.33","Nonsyn","ggcgaa","ggGCaa","GE","GQ",null,"fig|194542.41.peg.1929","toxin VapC12 @ Toxin 1, PIN domain","S","hypothetical protein","antitoxin VapB12 @ Antitoxin 1"]
["MP1xMP2","194542.41.con.0004",180426,"CA","AA",{"v":223192,"d":"223,192"},"3.0","0.25","Nonsyn","tttgcc","ttTTcc","FA","FS",null,"fig|194542.41.peg.345","toxin VapC25 @ Toxin 1, PIN domain","S","hypothetical protein","hypothetical protein"]
["MP1xMP2","194542.41.con.0015",19426,"CT","TA",{"v":16677,"d":"16,677"},"3.0","0.50","Nonsyn","ctg","TAg","L","*",null,"fig|194542.41.peg.722","toxin VapC29 @ Toxin 1, PIN domain","S","hypothetical protein","Galactose-1-phosphate uridylyltransferase (EC 2.7.7.10)"]
["MP1xMP2","194542.41.con.0018",1134,"TC","GG",{"v":568226,"d":"568,226"},"2.0","0.20","Nonsyn","tcg","GGg","S","G",null,"fig|194542.41.peg.870","toxin VapC31 @ Toxin 1, PIN domain","S","hypothetical protein","hypothetical protein"]
["MP1xMP2","194542.41.con.0039",38935,"TGATCCGGCG","TG",{"v":805283,"d":"805,283"},"4.0","0.67","Deletion","tga","TG","*",null,"yes","fig|194542.41.peg.1484","Transcription termination factor Rho","K","Homoserine kinase (EC 2.7.1.39)","LSU ribosomal protein L31p @ LSU ribosomal protein L31p, zinc-dependent"]
["MP1xMP2","194542.41.con.0044",36436,"TGA","TA",{"v":327261,"d":"327,261"},"2.0","0.25","Deletion","ttgacc","tTAcc","LT","L","yes","fig|194542.41.peg.1591","Transcriptional regulator, AraC family","K","hypothetical protein","PE_PGRS family protein "]
["MP1xMP2","194542.41.con.0023",14279,"TG","CT",{"v":746674,"d":"746,674"},"2.0","0.20","Nonsyn","ctg","cCT","L","P",null,"fig|194542.41.peg.1012","Transcriptional regulator, MarR family ","K","Putative transmembrane protein","tRNA/rRNA methyltransferase"]
["MP1xMP2","194542.41.con.0104",34824,"TG","CT",{"v":161077,"d":"161,077"},"2.0","0.33","Nonsyn","gca","gAG","A","E",null,"fig|194542.41.peg.3228","Translation elongation factor Ts","J","Putative amidase amiC (EC 3.5.1.4)","SSU ribosomal protein S2p (SAe)"]
["MP1xMP2","194542.41.con.0128",34298,"TA","AC",{"v":274603,"d":"274,603"},"2.0","0.22","Nonsyn","ggtagc","ggGTgc","GS","GC",null,"fig|194542.41.peg.4233","Transmembrane transport protein MmpL8/MmpL10/MmpL12","M","FIG01386146: Possible exported protein, Rv1184c","PKS-associated protein PapA, condensation domain-containing"]
["MP1xMP2","194542.41.con.0077",6470,"CA","AC",{"v":118332,"d":"118,332"},"2.0","0.33","Nonsyn","cac","ACc","H","T",null,"fig|194542.41.peg.2688","Trehalase (EC 3.2.1.28)","G","putative membrane protein","hypothetical protein"]
["MP1xMP2","194542.41.con.0114",7769,"GTG","GG",{"v":842262,"d":"842,262"},"2.0","0.33","Deletion","ggtgac","gGGac","GD","G","yes","fig|194542.41.peg.3754","Trehalose-6-phosphate phosphatase (EC 3.1.3.12)","G","Diacyglycerol O-acyltransferase (EC 2.3.1.20)","hypothetical protein"]
["MP1xMP2","194542.41.con.0116",19105,"TA","AC",{"v":455325,"d":"455,325"},"3.0","0.21","Nonsyn","ggtatc","ggGTtc","GI","GF",null,"fig|194542.41.peg.3806","tRNA threonylcarbamoyladenosine biosynthesis protein TsaB","J","Ribosomal-protein-S18p-alanine acetyltransferase (EC 2.3.1.128)","tRNA threonylcarbamoyladenosine biosynthesis protein TsaE"]
["MP1xMP2","194542.41.con.0071",23365,"GACGCTGGCTCCGCTG","GG","2702.66","2.0","0.22","Deletion","gtcagcggagccagcgtc","gtCC","VSGASV","V","yes","fig|194542.41.peg.2419","UDP-N-acetylmuramate--L-alanine ligase (EC 6.3.2.8)","M","Cell division protein FtsQ","UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase (EC 2.4.1.227)"]
["MP1xMP2","194542.41.con.0087",12180,"AG","CT",{"v":498389,"d":"498,389"},"2.0","0.20","Nonsyn","gag","gCT","E","A",null,"fig|194542.41.peg.2990","Uncharacterized protein Q1 colocalized with Q","S","Enoyl-CoA hydratase (EC 4.2.1.17)","Ribonuclease D (EC 3.1.26.3)"]
["MP1xMP2","194542.41.con.0087",12196,"GACCTC","GACTAC",{"v":675228,"d":"675,228"},"766.0","0.84","Nonsyn","ttgacctcc","ttGACTACc","LTS","LTT",null,"fig|194542.41.peg.2990","Uncharacterized protein Q1 colocalized with Q","S","Enoyl-CoA hydratase (EC 4.2.1.17)","Ribonuclease D (EC 3.1.26.3)"]
["MP1xMP2","194542.41.con.0009",54813,"GAT","AAT","181.92","2.0","0.33","Nonsyn","gat","AAT","D","N",null,"fig|194542.41.peg.510","Uncharacterized protein, similar to the N-terminal domain of Lon protease","S","Carboxylate-amine ligase","Cell division-associated, ATP-dependent zinc metalloprotease FtsH"]
["MP1xMP2","194542.41.con.0068",31976,"AC","CC",{"v":277554,"d":"277,554"},"4.0","0.57","Nonsyn","cac","cCC","H","P",null,"fig|194542.41.peg.2340","Vegetative cell wall protein gp1 precursor","M","putative membrane protein","hypothetical protein"]
["MP1xMP2","194542.41.con.0003",3409,"CA","AC",{"v":108648,"d":"108,648"},"2.0","0.33",{"$nulls":9},"hypothetical protein Rv0098","Polyketide synthase modules and related proteins @ Long-chain fatty-acid-CoA ligase (EC 6.2.1.3), Mycobacterial subgroup FadD10"]
["MP1xMP2","194542.41.con.0015",19039,"CTC","CAC",{"v":519728,"d":"519,728"},"2.0","0.29",{"$nulls":9},"putative membrane protein","hypothetical protein"]
["MP1xMP2","194542.41.con.0032",13373,"TCGC","CCGC",{"v":331978,"d":"331,978"},"2.0","0.33",{"$nulls":9},"Carboxylesterase (EC 3.1.1.1)","Carboxylesterase (EC 3.1.1.1)"]
["MP1xMP2","194542.41.con.0035",5935,"TGCG","TG",{"v":423438,"d":"423,438"},"2.0","0.22","Deletion",{"$nulls":8},"AAA-ATPase, domain of unknown function, and LuxR DNA-binding domain","Phosphoribohydrolase involved in Mycobacterial cytokinins production, homolog of plant cytokinin-activating enzyme LOG"]
["MP1xMP2","194542.41.con.0037",8766,"CG","TT","117.34","2.0","0.33",{"$nulls":9},"putative membrane protein","Superfamily I DNA and RNA helicases and helicase subunits"]
["MP1xMP2","194542.41.con.0039",35868,"GGAT","GT",{"v":128659,"d":"128,659"},"76.0","0.90","Deletion",{"$nulls":8},"Threonine synthase (EC 4.2.3.1)","Homoserine kinase (EC 2.7.1.39)"]
["MP1xMP2","194542.41.con.0048",6344,"CTGACGACGCGACAGCGGCGT","CT","1612.81","2.0","0.25","Deletion",{"$nulls":8},"hypothetical protein","Transcriptional regulator, AcrR family"]
["MP1xMP2","194542.41.con.0105",86430,"AA","TC",{"v":742132,"d":"742,132"},"2.0","0.33",{"$nulls":9},"16S rRNA (guanine(966)-N(2))-methyltransferase (EC 2.1.1.171)","Pyruvate carboxylase (EC 6.4.1.1)"]
["MP1xMP2","194542.41.con.0117",1390,"CACACCATGGTGAA","CA","2215.66","2.0","0.20","Deletion",{"$nulls":8},"PPE family protein ","hypothetical protein"]
["MP1xMP2","194542.41.con.0117",4249,"TGT","TAT",{"v":204341,"d":"204,341"},"2.0","0.33",{"$nulls":9},"Mobile element protein","hypothetical protein"]
["MP1xMP2","194542.41.con.0117",4259,"GTC","GC",{"v":181776,"d":"181,776"},"14.0","1.00","Deletion",{"$nulls":8},"Mobile element protein","hypothetical protein"]
["MP1xMP2","194542.41.con.0117",4439,"ACGGATGC","ACGGATGT","288.67","417.0","0.98",{"$nulls":9},"Mobile element protein","hypothetical protein"]
["MP1xMP2","194542.41.con.0126",5244,"AGGGGGGGGGGGGGGGGGGA","AGGGGGGGGGGGGA","1245.08","6.0","0.35","Deletion",{"$nulls":8},"Septum site-determining protein MinD @ possible CpaE","Phosphoserine phosphatase (EC 3.1.3.3)"]
["MP1xMP2","194542.41.con.0133",132,"CAA","CCA","1520.13","3.0","0.25",{"$nulls":10},"Mobile element protein"]
["MP1xMP2","194542.41.con.0133",32,"GG","CC",{"v":475627,"d":"475,627"},"4.0","0.33",{"$nulls":10},"Mobile element protein"]